Is this why some sets of instructions insist that the rice must be steamed and not boiled or cooked in a rice cooker?
No. Boiled, simmered, or rice prepared in a rice cooker (all forms of cooking by absorption) can be used to make sake. Most sake making instructions insist on steaming, however, for a multitude of reasons. I'll list some for you here:
(1) Rice prepared with an absorption method is tenaciously sticky. Breaking up all of the clumped rice is nearly impossible when dealing with rice prepared in this manner and, as any all-grain brewer can tell you, dough balls result in unconverted starch. It's a lot easier to break up those rice clumps when dealing with steamed rice because it's far less sticky.
(2) Sake requires a
lot of rice. Cooking said rice via steaming is a lot more efficient in a time and energy sense when looking at it on an industrial scale.
(3)
Koji making requires gelatinized starches with a fairly firm structure for the mold to grow on, and steaming rice meets this requirement. If you try to grow
koji on boiled rice, the result will be a puddle of goo after 40 hours.
I assume amylase eventually denatures at any temperature. Does it denature slower at lower temps? Faster at higher temps? Does anyone have charts, graphs, tables, etc?
Yes and yes. I might have some tables, but I'll have to check my brewing books upstairs to find them. Right now I have a three-year-old pulling on my arm, so it's all I can do to pound out this quick reply.
Does sake quit fermenting after ~2 weeks because the amylase gives up or because the sugars run out? (the highest quality sake requires regular additions of koji, I hear. I usually perform 2 infusions.) Is the sake higher quality because maintaining a more even level of sugar, amylase and so on is nicer to the yeast? (high ABV beer starts out with lots of sugar sometimes lead to angry yeast).
This is really two questions. My sake generally takes about four weeks to fully ferment out, and it does so mostly because the fermentables have run out and the yeast have largely died off from alcohol poisoning. In this case, it's because the starch has run out, not because the enzymes have denatured. I could (and sometimes do) add more rice at the end of fermentation to sweeten the sake up. Adding a pound of rice will increase the specific gravity significantly after three days at 50ºF, so there is definitely still some amylase present.
Higher quality sake comes from temperature control and higher quality rice. Higher quality rice usually means rice that has been milled down to a greater degree than that used in lower quality sakes. "Normal" grade sake uses 75% polish rice, while
ginjo (premium) grade sake is always made with <60% polish rice.
Daiginjo grade sake is made from 40% polish rice, and is really rare in the US because that method is so wasteful.
The malted barley has already been cooked -- BYO magazine says one stage of malting for pale grains is around 150 F; darker grains require temperatures up to 400+ F (
http://www.byo.com/feature/284.html). Why aren't the barley starches already geletanized after malting? Does geletanization require aqueous solution? If geletanization requires aqueous solution, then how can cooled steamed rice starch be gelentanized? Does the processing of barley make it better to use higher temperatures because the starch must be freed from the grain hulls and other barley bits, whereas the rice has more or less been stripped to the starch-only component, and rice starch can therefore more easily dissolve in water?
Starch gelatinization requires both heat and water. The dry heat of malt kilning won't do it, therefore barley malt starches are not gelatinized until introduced to hot mash water. Steamed rice is gelatinized by the water that the rice took on during soaking: the steam heats the water, and the heat and water gelatinize the starch. Gelatinization is irreversible, just because the rice has cooled doesn't mean the starch returns to its ungelatinized state.
Starch does not dissolve in water, nor does rice starch end up suspended in the water until after the
koji takes it apart. The
koji enzymes get suspended in the water, from where they can degrade the gelatinized rice kernels from the outside in. The leftover
kasu (rice lees) after fermentation is complete is made up of
koji mold, yeast, and that small percentage of the rice kernels that was indigestible to the enzymes - mostly structural proteins with some lipids and dextrins here and there.
Is there a reagent commonly available which will indicate whether amylase is around? (the simple experiment is to take several samples and add starch to half and then test with iodine/iodophor for blackness after ~30 min, but that is an indirect method.)
Common? Not that I know of, but Google turns this up:
https://www.megazyme.com/Dynamic.aspx?control=CSViewProduct&categoryName=ReagentMixtures&productId=R-CAAR4Chicha :: As far as I know, indigenous populations from South America achieved brewing by chewing corn products and spitting out the corn mash along with saliva into a fermentation vessel. Since saliva has both alpha and beta amylase in it (as I recall from 9th grade biology), this is an effective way to convert starch into fermentable sugar. NOTE : a lot of chicha produced in S.A. with the indigenous technique will make American travelers very sick with amoebas and the like and the ill effects of amoebas can persist for years. Anyway, this is further evidence that starch conversion doesn't have to occur at the magical mashing temperature. I know nothing about the effectiveness of converting starch this way nor do I know anything about the geletanization of corn starches or the effects of the myriad components of saliva on any of the aforementioned chemistry. I would not mind learning a thing or two.
This isn't unique to South America or chicha. The first sakes were called
kuchikami no sake which translates to "chewing of the mouth sake." They were made by chewing cooked rice, acorns, chestnuts, etc. and spitting the mixture into an open tub fermentation vessel. Likewise, the Chinese had their
xiao mi jiu that was made exactly the same way, references to which date all the way back to the 14th century BC.
Your first batch of sake looks pretty decent for a first try. A little refinement of your method and you could be turning out some first-class homebrewed sake.